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软件:Genome-wide Association Study Software

2024-09-24 DNA 加入收藏
The software included are listed bellow IMPUTEa program for genotype imputation

The software included are listed bellow

 

IMPUTEa program for genotype imputation in genome-wide association studies and fine-mapping studies based on a dense set of marker data (such as HapMap) [2 ,5 ]v1.0.0 v2.1.019-07-2009 20-01-2010
SNPTESTa program for Frequentist and Bayesian tests of SNP association with binary (case-control) and quantitative phenotypes that takes genotype uncertainty into account [2 ]v2.1.020-03-2010
HAPGENa program to simulate case control datasets at linked SNP markers conditional upon a set of known haplotypes [4 ]v1.3.017-01-2008
METAa program to carryout meta-analysis of genetic studies.v1.0.012-10-2009
GENECLUSTERa program for location and detection of unobserved causal loci in fine-mapping experiments and genome-wide association studies.v1.0.019-03-2010
CHIAMOa genotype calling algorithm for multi-cohort studies [1 ]v0.2.122-10-2007
GTOOLa program for (a) generating subsets of genotype data, and (b) converting genotype data between the PED file format and the FILE FORMAT used by SNPTEST and IMPUTE.v0.6.0  07-07-2009


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